analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)
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Aug 1, 2021 - Python
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microarray
Here are 29 public repositories matching this topic...
UNet 2.0 - Pytorch implementation of the U-Net 2.0 for image semantic segmentation, with processing blocks for noisy images
cnn pytorch microarray image-segmentation unet unet-pytorch unet-image-segmentation unet-model unet2 microarray-image-segmentation-cnn microarray-deep-learning image-segmenation-unet
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Oct 4, 2019 - Python
Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia
bioinformatics microarray microarray-data aml acute-myeloid-leukemia geoparse microarray-data-analysis genetic-expression-omnibus
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May 27, 2021 - Python
Python port of R limma for differential expression analysis
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Oct 31, 2026 - Python
Genomic data manipulation tool
bam-files bioinformatics genomics genome genetics microarray wgs genome-analysis whole-genome-sequencing sam-files cram-files
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Jan 27, 2026 - Python
bioTEA - A user friendly tool to perform transcript expression analysis
python linux docker microarray command-line-tool transcriptomics differential-gene-expression bioinformatics-tool
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Nov 13, 2024 - Python
Beacon v2 - CNAG Biomedical Informatics - Tools (Data ingestion tools)
python json browser vcf microarray snp beacon data-exchange 23andme bff beacon-v2 beacon-friendly-format beacon2-ri-tools cnag beacon2-reference-implementation bff-tools
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Oct 16, 2026 - Python
A toolkit for navigating and analyzing gene expression datasets
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May 12, 2022 - Python
SparkRMA: Robust Multi-array Average (RMA) In Apache Spark
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Jun 8, 2018 - Python
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
python datascience microarray datasets preprocessing ncbi ncbi-geo ncbi-database geneexpression preprocess-dataset microarray-data-analysis
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Jul 28, 2020 - Python
DOOGEE S55 Android 8 to LineageOS 18.1 / Android 11: guided offline installer, NikGapps Core, verified MicroArray fingerprint, battery and thermal fixes, recovery safeguards.
android mediatek fingerprint microarray twrp gsi gapps arm64 lineageos doogee mt6750 offline-installer custom-rom android-11 project-treble community-guide lineageos-18-1 doogee-s55 mt6750t
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Nov 12, 2026 - Python
Cross-platform (Windows + Linux) no-code desktop app for reproducible bulk RNA-seq & microarray analysis: STAR/HISAT2/Salmon alignment, DESeq2/limma, GO/KEGG/g:Profiler enrichment, and STRING PPI networks — with first-class support for crops and fungi that lack a Bioconductor OrgDb.
desktop-app python bioinformatics rna-seq genomics computational-biology deseq2 microarray reproducibility transcriptomics differential-expression graphical-user-interface limma no-code functional-enrichment non-model-organisms bulk-transcriptomics
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Nov 11, 2026 - Python
Label-driven comparison of gene expression regions across measurement technologies. Microarray, bulk RNA-seq and single-cell in one question, local first, no API keys.
python bioinformatics rna-seq genomics gene-expression tkinter microarray meta-analysis single-cell ncbi-geo
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Oct 5, 2026 - Python
extract experimental metadata from GEO xml files
rna-seq geo computational-biology microarray public-data single-cell rna-seq-analysis metadata-extraction
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Dec 8, 2023 - Python
Differential Expression Analysis Pipeline
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Feb 24, 2026 - Python
Genetic-embedded Nuclear Reaction Optimization with F-score filtering for gene selection in cancer classification. Published in IJMS 2025.
python machine-learning bioinformatics feature-selection microarray metaheuristics cancer-classification gene-selection
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Sep 24, 2026 - Python
python bioinformatics geo gene-expression data-visualization seaborn microarray transcriptomics arrayexpress swarmplot
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Jul 22, 2026 - Python
Automated GEO dataset search, download, and preprocessing tool for gene expression meta-analyses
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May 30, 2026 - Python
Clinical Copy Number Variation (CNV) Detection and ACMG Pathogenicity Scoring via 6-State HMM
python viterbi-algorithm bioinformatics genomics scientific-computing microarray hidden-markov-model copy-number-variation cnv-detection acmg-classification
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Nov 8, 2026 - Python
Tuberculosis@LOG and NPR, Macrophage gene expression time series.
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Oct 25, 2017 - Python
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